Package: TGST 1.0

TGST: Targeted Gold Standard Testing

Functions for implementing the targeted gold standard (GS) testing. You provide the true disease or treatment failure status and the risk score, tell 'TGST' the availability of GS tests and which method to use, and it returns the optimal tripartite rules. Please refer to Liu et al. (2013) <doi:10.1080/01621459.2013.810149> for more details.

Authors:Yizhen Xu [aut, cre], Tao Liu [aut]

TGST_1.0.tar.gz
TGST_1.0.zip(r-4.7-any)TGST_1.0.zip(r-4.6-any)TGST_1.0.zip(r-4.5-any)
TGST_1.0.tgz(r-4.6-any)TGST_1.0.tgz(r-4.5-any)
TGST_1.0.tar.gz(r-4.7-any)TGST_1.0.tar.gz(r-4.6-any)
TGST_1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
TGST/json (API)

# Install 'TGST' in R:

install.packages('TGST', repos = c('https://yizhenxu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yizhenxu/tgst/issues

Datasets:

Simdata - Simulated data for package illustration

On CRAN:

3.70 score 255 downloads 17 exports 22 dependencies

Last updated from:6ee8716eb0. Checks:7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel	NOTE	145
source / vignettes	OK	204
linux-release	NOTE	123
macos-release	NOTE	131
macos-oldrel	NOTE	170
windows-devel	NOTE	82
windows-release	NOTE	86
windows-oldrel	NOTE	90
wasm-release	OK	88

Exports:cal.AUC Check.exp.tilt CV.TGST nonpar.fnr.fpr nonpar.rules Opt.nonpar.rule Opt.semipar.rule OptimalRule plot ROC.nonpar ROC.semipar ROCAnalysis Semi.par.rule semipar.fnr.fpr summary TGST TGST.summ

Dependencies:cli cpp11 evaluate farver ggplot2 glue gtable highr isoband knitr labeling lifecycle R6 RColorBrewer rlang S7 scales vctrs viridisLite withr xfun yaml

Package 'TGST'

Rendered fromTGST-vignette.Rmdusingknitr::rmarkdown

Last update: 2020-11-16
Started: 2020-11-13

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Calculate AUC	cal.AUC
Check exponential tilt model assumption	Check.exp.tilt
Cross Validation	CV.TGST
Nonparametric FNR FPR of the rules	nonpar.fnr.fpr
Nonparametric Rules Set	nonpar.rules
Optimal Nonparametric Rule	Opt.nonpar.rule
Optimal Semiparametric Rule	Opt.semipar.rule
Optimal Tripartite Rule	OptimalRule
Constructor of Output class	Output-class
plot function.	plot plot,Output-method plot,TGST-method
Nonparametric ROC Analysis	ROC.nonpar
Semiparametric ROC Analysis	ROC.semipar
ROC Analysis	ROCAnalysis
Min TMR Semiparametric Rule	Semi.par.rule
Semiparametric FNR FPR of the rules	semipar.fnr.fpr
Simulated data for package illustration	Simdata
summary function.	summary summary,TGST-method
Create a TGST Object	TGST
Constructor of TGST class	TGST-class
Summary of Disease Status and Risk Score	TGST.summ